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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42086638_42089734_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42086638 - 42089734
Intron Length:
3097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CAGTATTTAATT
Flanking Amino Acid:
GFLWRSPQPQGREHRMGYPD
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.2
0.64
0.8
69.6
36.8
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
59.9
0.39
1.5
69.55
41.9

Associated Gene:

Gene:
FAM120B
Ensembl Gene ID:
ENSAPLG00000012280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012798
42083150 - 42132734
49585