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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42089849_42091552_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42089849 - 42091552
Intron Length:
1704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCATC
5'SS Class:
major
3'SS Sequence:
TACTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TCTTACATACAA
Flanking Amino Acid:
SRPRGRGFVAGAQQREFNPR
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.2
68.3
42.9
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
83.2
0.75
0.8
80.5
36.8
Minor 5ss
38.9
-1.2
3.1
51.9
45
Minor BPS
46
-0.3
2.1
62.62
43.1

Associated Gene:

Gene:
FAM120B
Ensembl Gene ID:
ENSAPLG00000012280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012798
42083150 - 42132734
49585