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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42091662_42095599_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42091662 - 42095599
Intron Length:
3938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTAATGTTAACC
Flanking Amino Acid:
CSVEELLEGNESLYTPFQNL
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.5
28.3
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
78.9
0.65
0.9
73
37.4
Minor 5ss
33
-1.9
2.8
41.3
38.3
Minor BPS
57.3
0.21
2.1
71.58
39.5

Associated Gene:

Gene:
FAM120B
Ensembl Gene ID:
ENSAPLG00000012280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012798
42083150 - 42132734
49585