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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42112829_42116922_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42112829 - 42116922
Intron Length:
4094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGG
5'SS Class:
major
3'SS Sequence:
ATCTCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTACTTTCATC
Flanking Amino Acid:
CCLLAYLMLQVHSLSLEDLN
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
67.1
44.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75.7
0.58
0.9
73.5
36.4
Minor 5ss
37.6
-1.4
3.2
49.7
46.6
Minor BPS
55.9
0.17
1.8
67.47
38.5

Associated Gene:

Gene:
FAM120B
Ensembl Gene ID:
ENSAPLG00000012280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012798
42083150 - 42132734
49585