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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42122831_42128283_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42122831 - 42128283
Intron Length:
5453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TTGTACTCCACT
Flanking Amino Acid:
VYSVLLEPGKGGACPSVKEW
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
77.5
0.62
0.9
77.1
37.1
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
50.9
0.11
2.2
77.29
44.8

Associated Gene:

Gene:
FAM120B
Ensembl Gene ID:
ENSAPLG00000012280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012798
42083150 - 42132734
49585