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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42143184_42143316_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42143184 - 42143316
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
CTTGTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTGT
U12 Branch Point Sequence:
TGCTCCTTGTCT
Flanking Amino Acid:
IRFPFGFTWPGTFSLIIEAL
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.3
63.6
42.9
Major BPS
31.2
-1.1
4.2
53.6
43.8
Major PPT
78.5
0.64
0.8
73.1
31.8
Minor 5ss
33.9
-1.8
3.2
44.7
43.5
Minor BPS
48.5
-0
3.5
79.9
42.3

Associated Gene:

Gene:
DLL1
Ensembl Gene ID:
ENSAPLG00000011635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012178
42142401 - 42149891
7491