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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42143378_42143540_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42143378 - 42143540
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTGT
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAC
U12 Branch Point Sequence:
GCACCCTGATCA
Flanking Amino Acid:
HTDSPDDLTTENPERLISRL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
69.9
43.4
Major BPS
63.2
0.33
1.2
65.7
41
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
46.4
-0.4
2.9
67.9
42.9
Minor BPS
48.2
-0.1
1.7
55.85
42.4

Associated Gene:

Gene:
DLL1
Ensembl Gene ID:
ENSAPLG00000011635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012178
42142401 - 42149891
7491