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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42146252_42146748_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42146252 - 42146748
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TTGTTGTCAACT
Flanking Amino Acid:
HGFCDKPGECKCRVGWQGRY
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
54.8
0.23
2.2
79.52
42.8

Associated Gene:

Gene:
DLL1
Ensembl Gene ID:
ENSAPLG00000011635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012178
42142401 - 42149891
7491