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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42146880_42147038_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42146880 - 42147038
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CAACGTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
TTTTCCCCAACG
Flanking Amino Acid:
EGWGGLFCNQDLNYCTHHKP
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
72
0.5
1
64.2
41
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
64
0.3
2
76.94
40

Associated Gene:

Gene:
DLL1
Ensembl Gene ID:
ENSAPLG00000011635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012178
42142401 - 42149891
7491