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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42149311_42149692_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42149311 - 42149692
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTCTCCCAACA
Flanking Amino Acid:
EKDECIIATEV*
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
86.4
29.1
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
78.7
0.65
0.8
74.5
29.3
Minor 5ss
36.7
-1.5
2.7
46.1
42.1
Minor BPS
54.9
0.15
1.9
73.95
37.2

Associated Gene:

Gene:
DLL1
Ensembl Gene ID:
ENSAPLG00000011635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012178
42142401 - 42149891
7491