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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42424907_42425518_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42424907 - 42425518
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTATTT
Flanking Amino Acid:
KTPSDYQQYLKFLKSILQYT
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.9
0.69
0.8
77.7
30.8
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
56.7
0.29
1.6
70.24
42.1

Associated Gene:

Gene:
ERMARD
Ensembl Gene ID:
ENSAPLG00000010834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011291
42424747 - 42440770
16024
ENSAPLT00000035933
42424747 - 42440770
16024
ENSAPLT00000032356
42424747 - 42440770
16024