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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42425633_42428569_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42425633 - 42428569
Intron Length:
2937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCTGA
5'SS Class:
major
3'SS Sequence:
TGCTTATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTATTAAAT
Flanking Amino Acid:
QRHNYLRMLNSIKFLFPVLR
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
58
43.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.7
0.62
0.9
70
40.5
Minor 5ss
38.2
-1.3
3.1
47.9
47.7
Minor BPS
65.7
0.57
1.7
83.39
36.8

Associated Gene:

Gene:
ERMARD
Ensembl Gene ID:
ENSAPLG00000010834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011291
42424747 - 42440770
16024
ENSAPLT00000035933
42424747 - 42440770
16024
ENSAPLT00000032356
42424747 - 42440770
16024