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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42428780_42430178_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42428780 - 42430178
Intron Length:
1399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTGGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTGAAATTAACA
Flanking Amino Acid:
DDPINSVVTERLLVKLCDKH
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
65.8
0.36
1.7
75.7
32.7
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
56.7
0.21
1.9
70.79
40.7

Associated Gene:

Gene:
ERMARD
Ensembl Gene ID:
ENSAPLG00000010834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035933
42424747 - 42440770
16024
ENSAPLT00000032356
42424747 - 42440770
16024
ENSAPLT00000011291
42424747 - 42440770
16024