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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42431145_42432378_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42431145 - 42432378
Intron Length:
1234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CGTTTTTGAATT
Flanking Amino Acid:
FSDGDTVAFKVLECMKSIHV
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
78.1
0.63
0.9
75.5
38.4
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
60.2
0.4
1.4
72.62
39

Associated Gene:

Gene:
ERMARD
Ensembl Gene ID:
ENSAPLG00000010834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032356
42424747 - 42440770
16024