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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42433232_42433742_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42433232 - 42433742
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTATATTCAAAT
Flanking Amino Acid:
PSALYTTFDEMLKKHLDNEE
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
83.6
0.76
0.8
77.3
36.7
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
54.1
0.21
1.8
75.82
40.2

Associated Gene:

Gene:
ERMARD
Ensembl Gene ID:
ENSAPLG00000010834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011291
42424747 - 42440770
16024
ENSAPLT00000032356
42424747 - 42440770
16024