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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42438213_42438769_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42438213 - 42438769
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTCTTTAATA
Flanking Amino Acid:
TSCLERALGDVYLLIGKDCP
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.6
0.67
0.8
77.2
30.1
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
81.7
0.99
1
82.68
32.7

Associated Gene:

Gene:
ERMARD
Ensembl Gene ID:
ENSAPLG00000010834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035933
42424747 - 42440770
16024
ENSAPLT00000032356
42424747 - 42440770
16024
ENSAPLT00000011291
42424747 - 42440770
16024