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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42438872_42439421_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
42438872 - 42439421
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CCACAAATCACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCCCACAAAT
Flanking Amino Acid:
VWFHWTNYTELFLEVFDVLQ
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
59
0.2
1
50.2
36.5
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
54.8
0.23
1.9
80.91
39.8

Associated Gene:

Gene:
ERMARD
Ensembl Gene ID:
ENSAPLG00000010834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011291
42424747 - 42440770
16024
ENSAPLT00000035933
42424747 - 42440770
16024
ENSAPLT00000032356
42424747 - 42440770
16024