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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42450456_42451022_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42450456 - 42451022
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
TTTAAACGCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTTTAAAC
Flanking Amino Acid:
RSCETSSQDLGYSYFPAENL
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
58.1
40.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.5
0.37
1
63
42.8
Minor 5ss
31.9
-2.1
3
32.7
41.5
Minor BPS
70.5
0.62
1.3
75.89
33.9

Associated Gene:

Gene:
PHF10
Ensembl Gene ID:
ENSAPLG00000010634
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011090
42450403 - 42465975
15573