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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42451154_42451969_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42451154 - 42451969
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTCGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACATTTTTATTG
Flanking Amino Acid:
GVTSFKRKYPDLERRDLSHK
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.8
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
63.8
0.31
1.7
70.1
41.4
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
48.7
-0.2
1.6
49.31
39.5

Associated Gene:

Gene:
PHF10
Ensembl Gene ID:
ENSAPLG00000010634
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011090
42450403 - 42465975
15573