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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42452054_42453444_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42452054 - 42453444
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGCTTTTATCT
Flanking Amino Acid:
NVITETQCTLGLTALRSDEV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.1
0.68
0.8
78.7
34.2
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
60.2
0.4
1.6
76.49
40.6

Associated Gene:

Gene:
PHF10
Ensembl Gene ID:
ENSAPLG00000010634
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011090
42450403 - 42465975
15573