Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42453579_42453701_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42453579 - 42453701

Intron Length:

123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

ATTTTTATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTATTT

Flanking Amino Acid:

RITDHYKEYSQMQQQNTQKV

Intron Amino Acid Position:

135

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

76.6

33.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.2

0.86

0.8

86.3

32.1

Minor 5ss

-1.4

2.8

52.2

44.4

Minor BPS

64.7

0.54

1.5

79.8

36.8

Associated Gene:

Gene:

PHF10

Ensembl Gene ID:

ENSAPLG00000010634

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011090

42450403 - 42465975

15573