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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42454882_42456413_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42454882 - 42456413
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TTATTGCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTGTTTATTT
Flanking Amino Acid:
IPGQFQEYYKRYSPDELRYL
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.9
0.61
0.9
74.7
36
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
56
0.27
2
77.64
39.7

Associated Gene:

Gene:
PHF10
Ensembl Gene ID:
ENSAPLG00000010634
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011090
42450403 - 42465975
15573