Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42490424_42492141_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42490424 - 42492141

Intron Length:

1718

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTATGTATA

5'SS Class:

strong_major

3'SS Sequence:

AATCTCTTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

TCAAACTTAAAT

Flanking Amino Acid:

PTPISCIQYSGDGGQLACGL

Intron Amino Acid Position:

524

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

80.1

34.5

Major BPS

71.6

0.54

33.1

Major PPT

75.9

0.58

0.8

69.7

35.8

Minor 5ss

45.9

-0.4

2.5

60.3

44.3

Minor BPS

57.9

0.33

1.7

72.39

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022063

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042495

42471073 - 42595293

124221

ENSAPLT00000020679

42471073 - 42544101

73029