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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42492232_42498156_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42492232 - 42498156
Intron Length:
5925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTA
Flanking Amino Acid:
NLTDTCNVFSGHDGAVNSVG
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
80.8
0.69
0.9
82.5
33.6
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
65.6
0.49
1.8
80.59
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022063
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042495
42471073 - 42595293
124221
ENSAPLT00000020679
42471073 - 42544101
73029