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Intron Name: Anas_platyrhynchos_platyrhynchos_3_42527311_42542781_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42527311 - 42542781

Intron Length:

15471

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTAAT

5'SS Class:

major

3'SS Sequence:

TTTTGTTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

AAAATATTACTT

Flanking Amino Acid:

FIASGSEDNCAYIYEMHSST

Intron Amino Acid Position:

780

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

1.1

34.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

82.1

0.72

86.9

31.1

Minor 5ss

39.4

-1.2

2.9

52.2

44.4

Minor BPS

-0.3

1.8

58.16

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022063

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042495

42471073 - 42595293

124221

ENSAPLT00000020679

42471073 - 42544101

73029