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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42702006_42703311_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42702006 - 42703311
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
ATTATTACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCTTTATTA
Flanking Amino Acid:
KGSIRENHFRGLLQNIQLIF
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
72.3
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.6
0.62
0.9
70.7
39.2
Minor 5ss
34.2
-1.8
3
36.5
40.9
Minor BPS
73.6
0.74
1.5
82.84
32.3

Associated Gene:

Gene:
THBS2
Ensembl Gene ID:
ENSAPLG00000009492
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009989
42699368 - 42729773
30406