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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42703397_42707826_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42703397 - 42707826
Intron Length:
4430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATATACAACT
Flanking Amino Acid:
RKKGCQRSQSTEVNTINEST
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
76.2
39.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.3
0.52
0.9
66
39.7
Minor 5ss
38.4
-1.3
3.6
56.8
41.8
Minor BPS
49.5
0.04
2
75.52
40.6

Associated Gene:

Gene:
THBS2
Ensembl Gene ID:
ENSAPLG00000009492
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009989
42699368 - 42729773
30406