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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42708024_42708770_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42708024 - 42708770
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCATCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATGCATTAACT
Flanking Amino Acid:
NNLADNLQKVSEENQIMWEL
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78
0.63
0.8
69.7
36.3
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
66.6
0.6
1.7
81.19
39.9

Associated Gene:

Gene:
THBS2
Ensembl Gene ID:
ENSAPLG00000009492
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009989
42699368 - 42729773
30406