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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42711472_42712977_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42711472 - 42712977
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCATATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCATAT
U12 Branch Point Sequence:
CTTTCCTGCATA
Flanking Amino Acid:
TEKCEKVPCPVNGQWGPWSP
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
59
0.23
1.2
55
42.7
Major PPT
69.7
0.44
0.9
66.5
39.1
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
57.3
0.22
1.9
71.86
40.7

Associated Gene:

Gene:
THBS2
Ensembl Gene ID:
ENSAPLG00000009492
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009989
42699368 - 42729773
30406