About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42719658_42721130_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42719658 - 42721130
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTCTTCAGTC
Flanking Amino Acid:
DSCAVDIDGDDIFNERDNCP
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.9
34.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.8
0.78
0.7
77.7
31.1
Minor 5ss
59.5
0.32
2.3
76.1
39.5
Minor BPS
55.6
0.16
1.7
68.93
36.9

Associated Gene:

Gene:
THBS2
Ensembl Gene ID:
ENSAPLG00000009492
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009989
42699368 - 42729773
30406