About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42721913_42724787_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42721913 - 42724787
Intron Length:
2875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTATTGCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTCACTTATTC
Flanking Amino Acid:
RYNPDQEDSDGDGRGDICKD
Intron Amino Acid Position:
935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
75.1
0.57
0.9
69
36.9
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
54.5
0.12
1.8
67.53
37.8

Associated Gene:

Gene:
THBS2
Ensembl Gene ID:
ENSAPLG00000009492
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009989
42699368 - 42729773
30406