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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42726787_42728659_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42726787 - 42728659
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CCTTTTCTAATT
Flanking Amino Acid:
LVHRPKTGLIKVLVYEGKQV
Intron Amino Acid Position:
1134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83
0.74
0.9
76.8
36.8
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
56
0.27
1.7
71.16
41

Associated Gene:

Gene:
THBS2
Ensembl Gene ID:
ENSAPLG00000009492
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009989
42699368 - 42729773
30406