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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_42782457_42787886_F

Intron Information:

Intron Rank:
136717
Intron Class:
major
Intron Phase:
Intron Coordinates:
42782457 - 42787886
Intron Length:
5430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTACTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTTTTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.3
0.79
0.7
79.1
34.2
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
67
0.51
1.5
77
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023634
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032880
42781832 - 42788044
6213