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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43001765_43004582_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43001765 - 43004582
Intron Length:
2818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AATTTTTCAACT
Flanking Amino Acid:
NTESTSPSRQQVSKKQG*
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.5
0.55
0.9
69.9
40.6
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
65.9
0.58
1.5
79.5
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016465
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045415
43001451 - 43006770
5320