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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43004627_43006345_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43004627 - 43006345
Intron Length:
1719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGAACC
5'SS Class:
major
3'SS Sequence:
TTATTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GATGTTTTATTT
Flanking Amino Acid:
EGKAETKKRHTAPKTNTEST
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
68
35.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.7
85.7
28.7
Minor 5ss
36.6
-1.5
2.9
47.2
35.8
Minor BPS
49.5
0.05
1.6
64.73
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016465
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045415
43001451 - 43006770
5320