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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43036956_43043784_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43036956 - 43043784
Intron Length:
6829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGTTTTTATTC
Flanking Amino Acid:
TGRPIPGTSTRYEQPKCDNS
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.2
0.75
0.7
81.8
30.3
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
54.7
0.13
1.5
61.84
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010314
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022373
43035738 - 43144776
109039
ENSAPLT00000010772
43023319 - 43144776
121458
ENSAPLT00000039137
43020763 - 43125341
104579