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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43072697_43073457_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43072697 - 43073457
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATTTACAAACTT
Flanking Amino Acid:
LETQPQGDEEDIASRYPTLW
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
43.7
-0.4
2.2
68.11
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010314
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039137
43020763 - 43125341
104579
ENSAPLT00000022373
43035738 - 43144776
109039
ENSAPLT00000010772
43023319 - 43144776
121458