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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43085738_43100856_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43085738 - 43100856
Intron Length:
15119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CATCATTCAACT
Flanking Amino Acid:
LEIAYRGNCKDVSRCVAERK
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.6
0.67
0.7
72.8
32.1
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
49.9
0.07
1.7
68.1
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010314
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039137
43020763 - 43125341
104579
ENSAPLT00000022373
43035738 - 43144776
109039
ENSAPLT00000010772
43023319 - 43144776
121458