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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43101029_43124722_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43101029 - 43124722
Intron Length:
23694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ACAGCATTAATA
Flanking Amino Acid:
CICFLACIAQFLRVDQDKDR
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29.8
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
82.9
0.74
0.8
81.9
35
Minor 5ss
43.5
-0.7
2.7
59
45.7
Minor BPS
52.9
0.09
1.7
59.61
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010314
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039137
43020763 - 43125341
104579