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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43155838_43161450_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43155838 - 43161450
Intron Length:
5613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTACCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
AATTCTATACTC
Flanking Amino Acid:
LGECLNISLKVNNNNKKSFH
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
71.4
0.48
0.9
63.8
37.8
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
49.3
-0
1.8
62.64
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031339
43155415 - 43203899
48485