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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43159494_43161450_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43159494 - 43161450
Intron Length:
1957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
GATTTGGCATTT
Flanking Amino Acid:
LGECLNISLKGAALWCCHTS
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
34.4
-1.1
2.5
53.24
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048345
43158136 - 43203899
45764