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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4316355_4318977_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4316355 - 4318977
Intron Length:
2623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATGTATTAATA
Flanking Amino Acid:
GVMLKLVEQIEMTQDWSDYA
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
79.7
30.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
30.1
-2.3
2.6
34
41.5
Minor BPS
54.2
0.13
1.6
63.62
36.7

Associated Gene:

Gene:
FERMT1
Ensembl Gene ID:
ENSAPLG00000001367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001656
4316204 - 4334303
18100