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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4319212_4320738_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4319212 - 4320738
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTGCCATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TCTTACTTTACT
Flanking Amino Acid:
KAVSDICKILNIRRSEELSL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
70.6
0.46
0.9
63.8
37.3
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
67.6
0.64
1.8
85.35
40.8

Associated Gene:

Gene:
FERMT1
Ensembl Gene ID:
ENSAPLG00000001367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001656
4316204 - 4334303
18100