About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43198231_43198770_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43198231 - 43198770
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCCAA
5'SS Class:
major
3'SS Sequence:
TTGTTGTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAG
U12 Branch Point Sequence:
TCTTGTTGTACA
Flanking Amino Acid:
RNSLNMVSLNRHCWKLERPL
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
62.9
39
Major BPS
48.2
-0.1
1.6
45.8
47.2
Major PPT
73.8
0.54
1
68.9
41.2
Minor 5ss
37.8
-1.4
3
46.5
48.8
Minor BPS
46.8
-0.2
2.2
63.43
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018716
43197906 - 43203899
5994