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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43200079_43200501_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43200079 - 43200501
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACTTTTC
5'SS Class:
weak_major
3'SS Sequence:
TCTTTGTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATATAT
U12 Branch Point Sequence:
ATATCCTGCACA
Flanking Amino Acid:
EYFTAFMNGKLTWGSYFDQL
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.2
68.2
37.6
Major BPS
59.1
0.23
1.1
56.7
39.1
Major PPT
85.8
0.81
0.8
80.7
31.4
Minor 5ss
46.2
-0.4
3
65.5
39.2
Minor BPS
58.1
0.25
1.9
71.96
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018716
43197906 - 43203899
5994
ENSAPLT00000016659
43197906 - 43203899
5994
ENSAPLT00000048345
43158136 - 43203899
45764
ENSAPLT00000031339
43155415 - 43203899
48485