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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43202020_43203102_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43202020 - 43203102
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTATCTTTATCA
Flanking Amino Acid:
DVILAGYPKTGTNWLEEMVR
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
85
0.79
0.8
82.3
33.9
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
64.9
0.46
1.6
71.76
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031339
43155415 - 43203899
48485
ENSAPLT00000018716
43197906 - 43203899
5994
ENSAPLT00000016659
43197906 - 43203899
5994
ENSAPLT00000048345
43158136 - 43203899
45764