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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43203183_43203458_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43203183 - 43203458
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAGAG
5'SS Class:
major
3'SS Sequence:
CTACTGCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTACTTACAA
Flanking Amino Acid:
VSLLSCSFERSSPETLEALK
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
66
40.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
65.5
0.35
1
62.8
38.5
Minor 5ss
35.3
-1.7
3.4
46.6
48.7
Minor BPS
55.5
0.17
1.9
70.76
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015969
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018716
43197906 - 43203899
5994
ENSAPLT00000016659
43197906 - 43203899
5994
ENSAPLT00000048345
43158136 - 43203899
45764
ENSAPLT00000031339
43155415 - 43203899
48485