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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43206712_43207390_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43206712 - 43207390
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTTTCTCCAATA
Flanking Amino Acid:
GALGSILFRKGGVSDWKSLF
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
74
0.54
1
75
33.7
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
58.9
0.28
1.8
76.28
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015983
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016674
43206276 - 43212276
6001