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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43208180_43209009_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43208180 - 43209009
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTGTTTTATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCTTCATCT
Flanking Amino Acid:
DFFIAFMTEKMPWGSYFNYL
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.1
62.9
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.6
0.71
0.9
82
34.8
Minor 5ss
38.4
-1.3
3.7
54.2
44.8
Minor BPS
61.8
0.45
1.8
81.5
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015983
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016674
43206276 - 43212276
6001