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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43209137_43209774_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43209137 - 43209774
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTCACT
Flanking Amino Acid:
PRSIFKSKAKILLLIRNPKD
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.7
0.87
0.7
85.2
29.2
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
66.1
0.59
1.7
83.9
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015983
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016674
43206276 - 43212276
6001